Because the founders suck at dealing with users. YC doesn't run your company for you.
Most people don’t do YC for the financial investment—they
do it because they want the advice, the help of the
network, the benefits of the program.
Heck, for a long time YC only invested something like $20k and got something like 7% of your company. From a money point of view, only a complete idiot would have taken that deal. What made it worthwhile was getting access to the YC people for advice.Now YC gives $120k for 7%, so it is no longer completely idiotic from a purely monetary point of view, but even at $120k most of the value is in the access it gives you to the YC staff and the other people YC puts you in contact with.
Because of this a lot of people have higher expectations for YC companies.
They're investors, not chaperons.
That "break the rules" post got around. Maybe there needs to be a "but don't be a massive jerk to ex customers" follow up post.