I admit to missing SSH, and a nice text-centric command line (sometimes), but Powershell is a decent shell that's built in. Chocolatey is a decent package and app manager that takes 15-20 seconds to install. And Atom and Sublime work wonderfully on windows.
Also, VS, which has a awesome free community edition, can be used to develop in most languages and frameworks. If you think it's top notch you should use it.
Part of the problem I've noticed with linux users complaining about Windows is that they try and develop linux applications or web servers on windows, then complain that it's difficult. This shouldn't really be surprising. The opposite situation is trying to develop a windows application or server on linux to deploy on a windows server. It's doable with Mono, but it's difficult. But I've never heard anyone from Windows land complaining about it.