To many people this is somewhat akin to black magic. CMS, G1, PermGen, Xmx, NewRatio... it takes time to get to grips with even the rudiments of the JVM, and many places simply do not have the expertise.
Also, it takes time to set up a JVM stack. You can have a rudimentary rails app running in a few minutes; it took me several hours to get a lightweight spark / mysql PoC up and running.
Java is performant, but it falls down in terms of RAD when contrasted against languages like Go and Ruby and against frameworks like Elixir or Rails.