It says it is shipping out with the 2A PSU while the rpi website recommends that the pi3 uses a 2.5A psu. Any reason?
Yes. The full recommendation reads "This time round, we’re recommending a 2.5A adapter if you want to connect power-hungry USB devices to the Raspberry Pi."
So I guess the assumption is the average person won't connect power-hungry USB devices to their Pi 3.
http://www.amazon.com/CanaKit-Raspberry-Supply-Adapter-Charg...