Isomorphic is 100% correct if you use the definition from biology, crystallography, sociology... etc etc. It's more technical of a term in one single field. In every other way it's a perfect description.
* Sociology: a similarity in the processes or structure.
* Crystallography: two structures closely similar in shape, formulation, and structure.
* Biology: a similarity of form or structure between organisms
All of these more closely describe a JavaScript application that lives on the client and server - because while they will be similar the likelihood of them having the complete same code (and therefore being universal is minimal.