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Merging is always hard in any machine generated file. I'd prefer to drive it with a proper script rather than the current ui generated xml file.

Taurus sort of does this. http://gettaurus.org/

I'll put it on my list to investigate.

I agree with that. JMeter's specific XML structure is GROSS. sibling elements when it really represents a parent/child relationship, etc...

I had forgotten about all that grossness.