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Firefox nightlies run quite well, ~35fps on MacBook Pro 2.4Ghz Core 2 Duo. No stuttering.

Edit: 60fps for one molecule, 35 for two.

Firefox 3.5 Linux, PhenomII 3GHz (ATI SB700 built-in graphics): two molecules at unsteady rates, mostly 30 to 60 fps. Nice work, thanks.

Chrome ~200fps i7 2.6GHz