Workflowy is pretty nice, it exports to plain text and xml.
I also like mermaid (https://github.com/knsv/mermaid), so I created a small rails app (https://github.com/juliend2/metaglue) that uses mermaid as the graph language, and it generates an SVG graph in realtime. I really like it and use it as a kind of brain dump for various subjects. The idea behind it is to collect any kind of data (bits of knowledge) and mash them all together inside a common graph.