I tried to do the right thing, use HTTP-only cookies set over an HTTPS endpoint only to find that it's stupidly complicated and has a lot of annoying edge cases. Turns out iOS's webviews don't like them, iOS in general doesn't like them to be on api.hostname.com if the app is on app.hostname.com, you can't validate if you are logged in or not without doing a web request (which is annoying as hell if you are trying to keep a "logged in" state in something like a react app), you need to deal with a bunch of stupid flags to get the damn browser to even let them go across domains, and a hell of a lot of other annoyances that I can't remember right now.
We are most likely moving to something like JWTs (stored in localstorage or indexeddb) soon because of these issues.