An emergency refrigeration system that works with consumable cryogenic material (say, dry ice or liquid nitrogen https://news.ycombinator.com/item?id=14127835) would be totally feasible and utterly inexpensive compared to the tragic costs of these cores melting.
I don't know the state of readiness of phase-change materials with appropriate transition temperatures (would need to be lower than -40 C) but if such a material exists, it'd work as well.
https://www.thermofisher.com/order/catalog/product/6214 http://www.helmerinc.com/Assets/helmer/knowledge-center/manu...
Given that it's commercially-available on freezers that get used to store critical biological material, there is no reason that a sample vault that stores irreplaceable ice cores can't have a similar, scaled-up version of this as well.