The Energy Expansions of Evolution
nature.com
nature.com
The presenter provides a series of small steps in the way of understanding how the combined leaps of 'dumb' evolution was able to design intelligence. He contrasts the 'bottom-up' approach to the 'top-down' design in a very intelligent manner.
EDIT: the O. P. Judson paper cites [1] which explores this issue in a mouse model.
[1] E. E. Groopman et al., Cooking increases net energy gain from a lipid-rich food. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272645
Yes. The transition to flesh eating happened sometime near the evolution of eukaryotes. Back then the single celled organism would consume another organism by wrapping around the other cell and then breaking down the trapped cell inside. That's where eating comes from. When sufficiently complex multicellular organism evolved the process moved from within the cell to within an enclosed area of cells. Plant and animals have been eaten in a similar manner since they evolved.