The issue is you're treating this as though (1) cruising can be done on autopilot via GPS because it doesn't need much accuracy, (2) landing can also be done on autopilot because we have more accurate systems, but (3) the transition between the two requires manual intervention because the plane can't reliably locate itself accurately enough to get in the right position for landing systems to take over.
But that simply doesn't seem to be the case (in normal weather, which we had here). See my reply to a sibling comment here for a link. It seems that in normal conditions planes are capable of doing it all in one go, which means they are capable of accurately and reliably locating themselves. Nobody is expecting these to work in extreme conditions like bad weather or bird collisions, but in those conditions autopilot can and does already get disengaged (whether automatically or manually), and this could be done the same way. It's not like we forbid autopilot entirely because it isn't 100% perfect, so why not apply the same standards here?