https://nutritionfacts.org/video/how-much-soy-is-too-much/
It should be noted that feeding babies milk from cows is an "experiment" too and there's a lot of evidence it's not good for them.
> Cultures with a long-time reliance on soy protein apparently realized this early, Patisaul adds. For instance, the compounds in soy are known to interfere with the body’s uptake of iodine, an element necessary for healthy functioning of the hormones produced by the thyroid gland. Chinese farmers first cultivated soybeans about 1100 B.C., so it’s not surprising, she notes, that many Asian diets gradually evolved to contain foods that contain extra high levels of iodine, such as seaweeds.
[0]: https://www.ers.usda.gov/data-products/adoption-of-genetical...
tl;dr: mostly pesticide resistance.
That has significant environmental/economic consequences, but those edits (probably) don't change how soy interacts with endocrine receptors.
Pesticide resistant crops being completely doused in glyphosate right before harvest probably does have an impact on health though.
http://people.csail.mit.edu/seneff/ITX_2013_06_04_Seneff.pdf
Edit: I suppose "pest" could refer to weeds and insects? I may have been thinking insecticide.
But that raises the question of what soy's GMO status has to do with its affect on the endocrine system?