Thats one hell of a test..
Scientist 2: well how about we anaestetise the caterpillar and use a microfilament to extract the gut contents, then we can ...
Scientist 1: <splat>
Specialty devices exist, but a standard high-speed desktop centrifuge can also be used, as a mouse will generally fit into a 50 mL centrifuge tube.
Generally best not to think about it too much if you like animals, but also like biochemical sciences. But if you're after a specific enzyme that would not be destroyed by rupture of the cell wall, whole-animal sacrifice by centrifuge is the cheap and easy way to get at it.