Multi threading brings in all kinds of security issues
What kind of issues are you thinking about? Multithreading is not easy but your typical race conditions and multi threaded problems aren't really opening doors to any new security exploits.
Browsers and WASM have quite decent sandboxing to mitigate security issues. There's WebWorkers already which brings a limited form of threads to the browser.
I'm not seeing a problem with multiple threads in a browser.
The VM should be sandboxing the pages from each other, so those are potential security threats against targets on the same pages only. Not something to be too concerned about.