I think when it comes to most desktop workloads, the security issues are far more interesting and serious. And while Meltdown only affects Intel CPUs, Spectre affects all (?) out-of-order CPUs and there may be more/more effictive attacks in the future. So every fast, modern CPU is pretty much in the same boat and it will take some time for the dust to settle.
So, I would just stick with the Intel CPU. You can vote with your wallet once one vendor decides to axe ME/PSP and/or properly mitigates Spectre-type attacks ;).