Yes, if you were willing to shell out 1000 bucks for the test, and if the bacteria was in your bloodstream (unlikely). If you swabbed, cultured, and sequenced, it'd be a better test.

I've personally used the oxford nanopore to diagnose malaria subtypes from ~1ml blood draws. Though it took awhile to do so, well beyond clinically relevant time periods. Our best turn around was about 2 days for sequence, but analysis takes much longer.