Which "HyperDB" are you talking about? I already listed Tableau's HyPer. Here are the other "hyper" systems that I know about and they don't do LLVM compilation:
* HyperDex (http://hyperdex.org/)
* HyperGraphDB (http://www.hypergraphdb.org/)
* HyperSQL (http://hsqldb.org/)
* Hypertable (http://hypertable.org/)