Access to syscalls would not be unusual in any case. This is the normal attack surface for an OS. The new attack surface is the WebAssembly compiler and checker.
To be honest though, given the processor vulnerabilities that have come about, I don't know if I really feel so bad about software protections like this anymore. Nothing is a panacea, even magical processor protection rings.
It may be memory safe, but honestly, memory-safety is no great trick anymore... pretty much everything except the languages currently used to implement kernels is memory safe. Memory safe is still not "generally safe".
Personally, I say more power to this high schooler. It's just a research project, and it'll be interesting to see where it goes. Nobody is suggesting you replace Linux/OSX/Windows with this thing anytime soon.