I'm not 100% comfortable with the trisomy thing, but I understand why people do it. The "moral difference" is primarily one of scale. Choosing to abort or not, in one particular case, is a human decision. That's even true of abortions motivated by "less moral" factors like economics or convenience. Those are still human decisions.
Deliberately aborting 99 out of 100 or 999 out of 1000 or whatever, that's not how humans interact with each other. That's the sort of decision-making I reserve for cattle or other livestock. (Although we wouldn't make much money if we were so Procrustean in our evaluation...) In that sphere, it's considered immoral by lots of perfectly sane people.
I'm not saying that this practice will never be normalized and accepted by most people. I am saying that if researchers try a little harder and develop methods with the same results but less abortion, the world will be a better place.