From one of the papers cited in the parent article:
"A growing body of evidence in the social and medical sciences traces high crime rates to high rates of lead exposure. Scholars have shown that lead exposure and crime are positively correlated using data on individuals, cities, counties, states, and nations. Reyes (2007) exploits state-specific reductions in lead exposure due to the Clean Air Act to estimate the effect of lead emissions from gasoline on violent crime. She reports that reductions in childhood lead exposure in the 1970s and 1980s accounted for more than half of the violent crime decline of the 1990s.2 Stretesky and Lynch (2001) estimate that, from 1989 to 1991, counties with air lead levels equivalent to .17 μg/m3 had homicide rates four times as high as counties with air lead levels equivalent to 0 μg/m3. Mielke and Zahran (2012) show that air lead and aggravated assault rates were strongly associated in a panel of U.S. cities. Longitudinal studies of individuals document a positive relationship between pre- and post-natal lead exposure and delinquency (Dietrich et al., 2001) and arrests for violent offenses (Wright et al., 2008). Cross-sectional research on individuals (Denno, 1990; Needleman et al., 1996, 2002) and counties (Stretesky and Lynch, 2004), studies using cross-national panel data (Nevin, 2007), and analyses of national time-series (Nevin, 2000) have yielded similar results."
Are each of these going to be able to factor for every possible confounder you can think of? No. But it's not like they aren't controlling for anything. That's the whole gist of the parent article - three studies using three new ways of controlling for other variables. Have you seen multitudes of studies that point to any of those other confounder you mention having better evidence, across time and geography, while controlling for lead and all the other possible confounders? Again, nobody is arguing that there are no other factors. And nobody has a precise answer on just how much, because it's impossible. But all studies point to: very large effects, still happening in some cases, and largely preventable: https://www.dropbox.com/s/07z65p9a5wdppfl/LifeAfterLead_AEJ_...