Sure they campaigned against nuclear, but that doesn't mean they approve of whatever other means the EU has been using as an alternative, as they themselves say on their website[1].
I'm sure if they got their way we wouldn't have nuclear or "bad" biofuels, and would just be paying a higher tax rate to scale up our sustainable energy production. That the EU has been dropping nuclear power without that investment in sustainable energy isn't Greenpeace's fault.
1. https://www.greenpeace.org/archive-eu-unit/en/campaigns/Clim...