I haven't followed the story in detail, but the claim of "brain abnormalities" appear to come from a small number of doctors who likely were primed with irrelevant information. "Doctor, take a look at these CT scans of diplomats in Cuba who might have been attacked using a sonic weapon." It is not far-fetched to imagine that this priming caused the doctors to see brain abnormalities where none existed.
Oh, and someone who was down-voted to dead status already linked to an article from 2017 in which the Cubans said they believed crickets were the culprit: https://news.ycombinator.com/item?id=18837926
See also this blog post, http://blogs.discovermagazine.com/neuroskeptic/2018/04/07/ba..., which in not so kind words calls the original study junk: "The condition suffered by the US diplomats in Cuba has been labelled “mysterious” (Rubin, 2018). The real mystery though is how such a poor neuropsychogical report could have passed the scrutiny of expert reviewers in a first class outlet."