There was work underway at the time I left to replace InnoDB with WiredTiger. It seemed to be very slow going, and I suspect WiredTiger being acquired by 10gen had a part in it. They also had only 1-2 engineers on the project of ripping out MySQL and replacing it, in a long-lived branch that constantly dealt with merge conflicts from more active feature development happening on mainline.
Aurora, simply by virtue of being newer and learning from DDB's mistakes (in the same way DDB learned from SimpleDB and the original Dynamo) probably has better extension points for supporting (MySQL, Postgres, Mongo) in a sane way.