I think it's important to make this distinction. A lot of websites don't need the JavaScript they ship with to present the material the users want. I agree those websites should work without JavaScript.
However, you can't expect actual web applications to do this.
Examples
- https://www.audiotool.com/app/ (sign in required; demo https://www.youtube.com/watch?v=gvIu_R8bmdA)
- https://human.biodigital.com/signin.html (sign in required; demo https://www.youtube.com/watch?v=dW4JSMlBhWQ)
Other more commonly know examples
- Most of Google Drive offerings
- Google Analytics control panel
- Twitch
I see this confusion a lot when this topic is discussed on HackerNews.