Compare:
@ Linux, BSD -> Windows, OS X @ ogg -> mp3 @ Theora -> H264, @ Gimp -> Photoshop, @ Open Office -> MS Office, @ Mono -> Windows .NET CLR, @ GNUStep -> Cocoa,
The only exceptions I can think of are Firefox/Webkit (still lagging behind IE, though).
In the server side, of course, it's different: Apache, Bind, MySQL, PHP, etc...