I don't follow... Can you elaborate?
Some people apparently find loading the flash iPaper viewer as more annoying than viewing a raw PDF.
Often the PDFs that get posted are interesting enough for me to want to archive and read more in depth on the bus, when I don't have an internet connection. Scribd makes this a royal pain in the arse.
Also, I strongly prefer the native feel of a decent PDF reader over a slow Flash UI running in the browser. (no, Adobe doesn't count as decent.)