This is, at the very least, a significant editorial oversight.
If something is abusable but on balance worth keeping, then it should be publicly positioned as such and the balancing factors dicussed. Ignoring the abusability of something and focusing solely on the upsides is one of the classic moves from Ye Olde Bag Of Dirty PR Tricks.
With respect, I would suggest that the cost-benefit analysis here is more one-sided than you think it is -- one-sided enough that an exploration of the security benefits would need to come with a lot of caveats, and would be a net decrease in the readability of the article.
It's not clear to me that deprecating a dedicated request modification API improves security in any meaningful, practical way for most users, and I think there's some benefit to occasionally skipping details that are irrelevant to the main story, so that ordinary people will find it easier to wade through.
I would compare this to the way that Google bundles wifi access and location access on Android. People complain about it, but it's a sensible decision -- there's no point in restricting just one of them. Similarly, I don't see any point to restricting request modification without also restricting access to request content/headers/cookies and removing the ability to inject arbitrary JS into the page. I think Google is engaging in security theater here.
The dishonesty I'm referring to is Google's, here: https://security.googleblog.com/2019/06/improving-security-a...
By definition, restricting the APIs extensions can use limits their power. Less powerful extensions can do fewer things, good or bad. Fewer bad things adds to privacy and security. At least that's what I understand.
Yes, I know ad blocking makes your browsing more private and secure, but that's another discussion.
Manifest V3 is solely about reducing harm to Google's ad business. Full stop. Their stated reasons are very disingenuous. They knew full well how this would play out.