I do agree that merge commits can obfuscate history somewhat. However, I agree with dimes that its better to not rewrite history just to keep the commit history clean... the cleanliness is not worth the price for inability to collaborate effectively.
Also, any professional code review tool will not let merge commits affect your review. Highly recommend reviewable.io for this.
Also, I only rebase when it makes sense in that case, you need something from master or you're about to merge back into master, so disruption should be minimal.
Your parent comment is suggesting rebase only for pulling latest changes in master into your pull request.
For merging someone's pull request to the team's master, sure use a merge commit.
But if you are working on a pull request and while you are working on it, the team's master gets updated and now you want to base your work on the recent master, by all means, use git rebase. That is what it is meant for, to rebase your work on another work. It's in the name itself.
Right tool for the right job.
The best way to handle that is to run git stash save, git fetch origin, then run git rebase @{u} to rebase your local branch on top of the new upstream branch. Then run git stash pop to apply any uncommitted changes.
> Doing a typical “git pull” in this situation will lead to merge conflicts
This is why I never use git pull, and always run git fetch instead. This allows me decide whether I want to merge the upstream changes, rebase on top of them, or just run git reset --hard to just use the upstream branch as is.
> Once you rebase, that commit hash will no longer point to anything.
Unless git gc deleted the dangling commits (along associated trees and boobs), the hash value will still show the commit. In fact, it's possible to show a diff from that commit to the corresponding commit in the rebased branch.
It boils down to: what you are doing on your own branches is your thing, but when interacting with shared ones do so with some professionalism and decency.