This was a simple example to illustrate a point. A more realistic example would be: owning 100% of a company making $1M/year is better than owning 40% of a company making $100M/year where investors put in $500M with a 4X liquidation preference. This case is even clearer here, but not quite as easy to parse.
Modern VCs allow founders to retain a large "percentage" of their company in stock or other ownership terms, but they use liquidation preferences and other mechanisms to effectively increase their financial leverage.