We know about all the ones that matter though. Like the keystones of the ecosystems.
As an analogy, if you knew the top 10% keystone chemicals that make up the human body but did not know the long tail of the other 90%, you'd likely miss out on a lot of the details that make it all work like immune system cells and vitamins. Just because a molecule (or species) is rare does not make it non-essential.
Could you explain? Dow we know of all the viruses/ bacteria/ trees/ insects that 'matter'?