They may not be having caste-based discrimination but they do have other forms of discrimination. That's why you have terms like heathens, heretics and kafirs.
While I agree that Hindus have more of this caste-based discrimination, a simple search shows that it's not exactly uncommon in other religions in India.
https://scroll.in/article/876000/is-the-caste-system-deep-ro...
https://theprint.in/opinion/indias-muslim-community-under-a-...
https://www.newindianexpress.com/states/kerala/2019/sep/01/c...