Unlike some comments here, when I move from TrackPad to mouse, I still think of the scroll wheel as the document, so natural scroll makes more sense for me, personally.
The only thing I would get rid of in TrackPad is the "bounce effect" when you reach the Home/End of the document. Also, many documents are perfectly fit in the app window (e.g. Preview) but still the horizontal scroll moves them around, which is annoying (try opening a new PDF in Preview and use left/right arrow keys to move to next page; it scrolls the document horizontally slightly!)