Scientific Materialism posits that you are merely a random bag of particles, bouncing through a random universe.
In such a model, there is no intelligence, consciousness, rationality or even reason.
In order to even accept the very notion of 'reason' you have to accept some kind of higher truth.
In addition you have to accept that there is 'a reasoner'.
You can't avoid taking a metaphysical posture - this is the anti-rational position that a lot of knee-jerk opposition to religion is founded upon.
There's nothing about the Church that is 'anti reason' - the Church founded all the best/most Universities in the world, and every other university is modelled after that.
The Motto of the Ivy Leagues are: 'Truth' or 'Truth and Light' or 'Light' etc. i.e. metaphysical aspirations.
Religion is the contemplation of higher order truths, mixed in with a bunch of applied social stuff.
Therefore: "Preferring Reasoning to Religion" is to misunderstand religion (i.e. Apples to Oranges), although to be fair, a lot of religious adherents do have a problem with that as well.