He finds that his interest in languages and linguistics exceeds that of spreading Christianity and makes a career change.
Then, either
A) He realizes that he’s the only one who speaks this language and concocts a scheme to seek fame and fortune by falsely claiming it contradicts the leading theory of linguistics because no one can prove him wrong. Mwahaha!
Or
B) As he learns about linguistic theories, he realizes that the language he learned as a missionary contradicts the leading theory of linguistics. This is academically interesting, so he writes a paper and gives talks describing what he found.
While A is certainly possible, it seems B is more likely.