LetsEncrypt automated the certificate creation, which resulted in very large number of certificate issued. But at the same time, it should be possible to revoke them all.
If the revocation mechanism doesn't scale as much as the creation, this is a huge problem.
This time, the misissued certificates probably won't cause large issues. But they are misissued nevertheless and should be revoked.
If they are not revoked because it would be too complex and will break WebPKI, then what will happen when a larger issue happen that require the revocation ?