If our ancestors would have made the rational assessment that there is unlikely to be a predator hiding behind the bush, that would have worked only as long as it worked, until one day they got eaten.
Irrationally overestimating threats and risks is not an optimal approach, but as long as you can survive it can be a long-term optimal approach.
Humans using irrational stories to enable group cohesion and coordination are similarly irrational but intrinsic ways of being that also provide an evolutionary advantage.
Rationality, however is an incredible optimization tool when operating in domains that are well understood, like the example of stereo equipment that the author gave in the article. It can also help in the process of expanding knowledge by helping a systematically compare and contrast signals.
But it doesn't prevent the lion from eating you or the religious or temporal authority from ostracizing you from the safety of the settlement, and it may even make both of those outcomes more likely.