Linux can also run Windows. In fact ironically Windows used to run faster inside a VM on Linux than it did on bare metal.
Any sources for this? I don't think it's true.
As for why file system operations are slower in Windows than on Linux, there's quite a lot of discussion around that from WSL. I don't really recall the internals of Windows fs operations but there is something about those syscalls generating events that trigger other processes (eg so you can attach a virus scanner) vs Linux's approach of optimising the syscall for performance. The Linux approach does have it's disadvantages in that often you'd want to write software that is triggered upon a file system event and there's no way to watch a nested directory. But overall I'd take the win with fast reads and writes.