A grim warning from Israel: Vaccination blunts, but does not defeat Delta
science.org
science.org
In fact, the scariest statistic it gives--that nearly 60% of serious hospitalizations are fully vaccinated) gives the p(vaccinated|infected), not p(infected|vaccinated).
Trivially, and to make the point, if 100% of people are vaccinated, then 100% of hospitalizations will be among the vaccinated--which tells you almost nothing about how likely it is to be hospitalized when vaccinated (beyond that its nonzero).
An embarrassing failure for science.org
p(v|i) = 0.6
p(v) = 0.6
p(i) = ?; but it's high (record case counts)
p(i|v) = p(i); high
If Israel has a 60% vaccination rate, and 60% of those in the hospital are vaccinated, then doesn't this mean the vaccine has no effect on the chances of being hospitalized?Israel has a low overall vaccination rate because they have a very young population.
If you restrict the sample to just >50 year olds (majority of hospitalisations), then both statistics look very different.
https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/burd...
About 78% of those above 12 are vaccinated in Israel, and the rate is even higher for those more susceptible to the virus.
Without quantifying those factors, it’s going to lead to a garbage in garbage out assessment.
87% of those who were hospitalized were 60 or older (which doesn't match the general population). I imagine that vaccination rates are much much higher than 60% among those over 60. In the US its around 80%. But also, hospitalizations are much more likely the older you get. Moreover (and this was the point of the paper the article was discussing), the effectiveness of the vaccine may dwindle with time, and the 60+ crowd were among the first to get vaccinated.
So, no, I don't think you can do so simple a calculation and conclude that.
Instead of back of the envelope estimates, I think I'd just point to this study: https://www.nejm.org/doi/full/10.1056/NEJMoa2108891
Abstract:
Background
The B.1.617.2 (delta) variant of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019 (Covid-19), has contributed to a surge in cases in India and has now been detected across the globe, including a notable increase in cases in the United Kingdom. The effectiveness of the BNT162b2 and ChAdOx1 nCoV-19 vaccines against this variant has been unclear. Methods
We used a test-negative case–control design to estimate the effectiveness of vaccination against symptomatic disease caused by the delta variant or the predominant strain (B.1.1.7, or alpha variant) over the period that the delta variant began circulating. Variants were identified with the use of sequencing and on the basis of the spike (S) gene status. Data on all symptomatic sequenced cases of Covid-19 in England were used to estimate the proportion of cases with either variant according to the patients’ vaccination status. Results
Effectiveness after one dose of vaccine (BNT162b2 or ChAdOx1 nCoV-19) was notably lower among persons with the delta variant (30.7%; 95% confidence interval [CI], 25.2 to 35.7) than among those with the alpha variant (48.7%; 95% CI, 45.5 to 51.7); the results were similar for both vaccines. With the BNT162b2 vaccine, the effectiveness of two doses was 93.7% (95% CI, 91.6 to 95.3) among persons with the alpha variant and 88.0% (95% CI, 85.3 to 90.1) among those with the delta variant. With the ChAdOx1 nCoV-19 vaccine, the effectiveness of two doses was 74.5% (95% CI, 68.4 to 79.4) among persons with the alpha variant and 67.0% (95% CI, 61.3 to 71.8) among those with the delta variant. Conclusions
Only modest differences in vaccine effectiveness were noted with the delta variant as compared with the alpha variant after the receipt of two vaccine doses. Absolute differences in vaccine effectiveness were more marked after the receipt of the first dose. This finding would support efforts to maximize vaccine uptake with two doses among vulnerable populations. (Funded by Public Health England.)
I mean, that's still scary, people were hoping for exactly 0% of covid-related hospitalization if you're vaccinated
If susceptibility to infection is above some point in the general population, then infections become a self-sustaining cascade through social networks (of course, the composition and structure of that network also matter--I'm simplifying). But if you can push susceptibility lower enough, the infections will not cause self-sustaining cascades.
This is, btw, why I consider anti-vaxxers (in the before times) as free-loaders who relied on those around them being vaccinated to protect them.
https://www.businessinsider.com/delta-variant-made-herd-immu...
But all that logic is really thrown out the window with widespread availability of effective vaccines.
> An embarrassing failure for science.org
Yes. Looking at the author's bio, you would expect a more nuanced comment and not this kind of fear mongering.
Meredith Wadman
Meredith joined Science as a staff writer in September 2016, after covering biomedical research and its politics from Washington, D.C., for 20 years. Her current beat includes biology research, policy, and sexual harassment . She has been a staff writer for Nature and a contributing writer at Fortune. She has also written op-eds for The Wall Street Journal, The New York Times and The Washington Post. Her first book, The Vaccine Race: Science, Politics and the Human Costs of Defeating Disease, was published by Viking (U.S./Canada) and Transworld (U.K.) in February 2017. Meredith earned her B.A. in Human Biology at Stanford University and began medical school at the University of British Columbia in her native Vancouver. She completed her medical degree as a Rhodes Scholar at the University of Oxford in the United Kingdom, and earned a master’s of science at the Columbia University Graduate School of Journalism.
https://www.washingtonpost.com/outlook/2021/08/31/covid-isra...
https://www.covid-datascience.com/post/israeli-data-how-can-...
This is such an important point, I think it's worth including the key table here:
Vaccine effectiveness vs. severe disease for younger (<50yr) = 1 - 0.3/3.9 = 91.8%
Vaccine effectiveness vs. severe disease for older (>50yr) = 1- 13.6/91.9 = 85.2%
But if you combine the two, you get 67.5% !!!! which is the # people have been wrongly focused on.
We have never eradicated the flu, it mutates too fast. Same is true with Covid-19. The medical establishment has always known this, yet they spread propaganda because, again, being vaccinated is safer. The numbers about 99% effective were a lie, they knew it would mutate and that would see a drastic drop.
I would argue this is a dangerous game they are playing with public trust.
The numbers I have are ~96% for the Pfizer, and ~94% for Moderna.
I explain this in another comment below, but even against Delta, the efficacy is actually quite high, even in the Israeli data:
Vaccine effectiveness vs. severe disease for younger (<50yr) = 1 - 0.3/3.9 = 91.8%
Vaccine effectiveness vs. severe disease for older (>50yr) = 1- 13.6/91.9 = 85.2%
The combined number suffers from Simpson's paradox, please read more:
https://www.covid-datascience.com/post/israeli-data-how-can-...
& please stop spreading misinformation. 96-94% to 85-91% is against a new variant is hardly a drastic drop. The vaccine is saving millions of lives globally.
The article also said "most". There is some relatively good data from Israel, but, still, in practice most doesn't just mean > 50% but is essentially wildly undefined. So apparently the author(s) of the article like to write with emotional adjectives instead of important numerical data.
The authors were trained in belle lettre (maybe art as in communication, interpretation of human experience, emotion or VEFEEE -- vicarious escapist fantasy emotional experience entertainment) or just like to grab people by the heart, the gut, below the belt to get eyeballs for ad revenue? Whatever, when they got to most I quit reading.
It is however quite possible at this point, that the effectiveness against symptomatic infection wears off to nearly zero after 5-6 months.
This seems to be the cause with both mRNA and sinopharm's inactivated virus vaccine as well.
Quote:
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This number is meaningless without also knowing what percentage of the people are vaccinated. Compare:
"80% of the people in hospital have $foo, and 80% of the general population has $foo" - $foo has no bearing at all on hospitalisation.
"80% of the people in hospital have $spon, and 5% of the general population has $spon" - $spon is clearly linked to the majority of hospitalisations.
"45% of the people in hospital have $bar, and 5% of the general population has $bar" - $bar is linked to higher rates of hospitalisation, _despite_ not being the majority of hospitalisations.
Spoiler: for some age groups in the UK now, "being unvaccinated" is much like $bar.
---
I would add now:
"not $bar -" i.e. "being vaccinated" could make up "55% of the people in hospital" (or more) despite reducing the odds of it.
and "not wearing seatbelt" -> "in hospital after a car crash" is probably like the $spon case.
Those examples above of course come with the caveat "all other things being equal" which isn't the case if, e.g. that others have raised, the age breakdown of the whole population vs hospitalisation is different. That's why there are graphs of "over 50s, vaccinated vs. hospitalised" as a catogory.
A few other things about Israels vaccine program.
- They started early(12/20) so I imagine alot of the populace is starting to run into vaccines that are less effective than if they were administered late Spring like US/UK and Europe.
- I don't know what the obesity levels are like in that country but the CDC says there is a strong correlation between being obese and covid severity with a person.
- Of the hospitalizations mentioned there is a strong indication of age being a cause for more severe illness:
>Of the 514, 59% were fully vaccinated. Of the vaccinated, 87% were 60 or older
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2095096/
There is a strong correlation between national obesity rates and COVID-19 death rates.
If you know the cancer patient has 2 weeks left you're not going to vaccinate him. If that same cancer patient dies with covid it'll be counted as an unvaxxed covid death
https://www.who.int/news-room/feature-stories/detail/vaccine...
Vaccine efficacy is found in trials, vaccine effectiveness is dynamic depending WHEN you calculate it and its found after 'deployment in the field'
"A vaccine’s efficacy is measured in a controlled clinical trial and is based on how many people who got vaccinated developed the ‘outcome of interest’ (usually disease) compared with how many people who got the placebo (dummy vaccine) developed the same outcome. Once the study is complete, the numbers of sick people in each group are compared, in order to calculate the relative risk of getting sick depending on whether or not the subjects received the vaccine. From this we get the efficacy – a measure of how much the vaccine lowered the risk of getting sick. If a vaccine has high efficacy, a lot fewer people in the group who received the vaccine got sick than the people in the group who received the placebo."
vs
"Vaccine effectiveness is a measure of how well vaccines work in the real world. Clinical trials include a wide range of people – a broad age range, both sexes, different ethnicities and those with known medical conditions – but they cannot be a perfect representation of the whole population. The efficacy seen in clinical trials applies to specific outcomes in a clinical trial . Effectiveness is measured by observing how well the vaccines work to protect communities as a whole. Effectiveness in the real world can differ from the efficacy measured in a trial, because we can’t predict exactly how effective vaccination will be for a much bigger and more variable population getting vaccinated in more real life conditions."
https://www.businessinsider.com/delta-variant-made-herd-immu...
Countless millions will live with a permanent disability their entire life.
Extraordinary claims require extraordinary evidence. I see no reason to believe this at all. Side effects from a viral infection, and specifically coronaviruses, lasting for months or even a year or two afterward in uncommon cases are well documented. To say that "countless millions will live with a permanent disability" with regard to a virus that has only even existed in humans for ~2 years now is completely unfounded, and over dramatic.
According to Google's numbers, their current 7-day average number of deaths is 23, while in January they had a 7-day average of about 65. And it looks like the deaths peaked in the past week.
https://www.google.com/search?q=israel+covid+cases&rlz=1C1CH...
For reference, the numbers in Florida (where vaccination rates are significantly lower) look a lot different. You have many more cases and more deaths than the January peak.
https://www.google.com/search?q=florida+covid+cases&rlz=1C1C...
Variants have been circulating throughout the population causing a high number of deaths for all of modern history. Now that we’ve encountered a somewhat more deadly and contagious version than normal and the “danger” of this version has been super hyped, we’re quite sensitive to all flu related news, all flu variants, all flu deaths, etc. Confirmation bias at work. We’re now noticing something that was there all along: people die from the flu.
Even if actual flu related deaths reverted to a pre-2020 level, I guarantee it would still be news. People will still be wearing masks, state/local governments will be enforcing mandates, etc.
Couple the above with the fact that a group of bureaucrats have managed to seize an almost dictatorial amount of “emergency” powers, you can bet this isn’t going away anytime soon.
A magnitude more deadly. Flu's death rate is ~.1%, Covid's is about 2-3%.
What percentage of the population do think has been infected?
Pick your number but COVID <> The Flu.
I can't believe almost a million people have died and people still shrug it off as just the flu.
0.7% in Israel. Much much less if you exclude terminal cancer, obesity and immunosuppressed transplant recipients.
The logic of "they were going to die anyways" means we might as well change every cause of death to "old age" or "natural causes", because if nothing else gets us, that's how we will all eventually die. But, of course, that would be stupid, and it would make death statistics meaningless - which is why we don't do it for COVID deaths.
This state is called "dying". Dying people in ECU will develop pneumonia no matter what. If it would not be COVID, it would be their own gum bacteria.
You probably know a lot of people are in those groups.
[1] https://en.wikipedia.org/wiki/List_of_countries_by_obesity_r...
[2] https://www.cdc.gov/diabetes/pdfs/data/statistics/national-d...
https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/burd...
And even then... ok... COVID is only FIVE times more deadly, not 10.
It's not slightly more.
They were in pre-2020 for bad flu pandemics:
https://en.wikipedia.org/wiki/2009_swine_flu_pandemic_in_Mex...
What I find curious is that SARS-CoV-1 (e.g. the original SARS circa 2003) seemed to eventually disappear overnight. It leaves me pondering two questions:
1. Did SARS-CoV-1 actually disappear or do we just not hear about it anymore?
2. What is different between SARS-CoV-1 and SARS-CoV-2 that makes us think the latter will persist indefinitely when the former seemed to disappear?
https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndr...
SARS-CoV-2 is more contagious and less fatal so it has already spread worldwide. It also has multiple animal reservoirs so even if there was some way to simultaneously eliminate the virus from every human (there isn't), we would just catch it again from dogs or deer or something and the pandemic would restart.
Edit: looks like its in development. https://www.npr.org/2021/07/09/1014744345/pfizer-is-pursuing...
I heard something about tests on vaccine combinations (i.e. different types of vaccine for your 1st & 2nd dose) a while back though but I can't remember the details, does anyone know what happened with that?
Still, the benefits of vaccination remain significant - vaccines are helping prevent severe outcomes like hospitalization and death for many people.
Researching formulations that are more robust to viral resistance is already becoming a top priority. Diversifying viral elimination strategies at the population level will also be critical. Mandatory nonpharmaceutical interventions such as lock-downs and masking may help slow the spread of the virus, but at this point those measures will not stop the spread, because SARS-CoV-2 is highly contagious and primarily transmitted through the air (as acknowledged by the WHO and CDC) [3].
[1] Effectiveness of COVID-19 Vaccines in Preventing SARS-CoV-2 Infection Among Frontline Workers Before and During B.1.617.2 (Delta) Variant Predominance — Eight U.S. Locations, December 2020–August 2021 https://www.cdc.gov/mmwr/volumes/70/wr/mm7034e4.htm
[2] Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce https://www.nejm.org/doi/full/10.1056/NEJMc2112981
[3] Airborne transmission of respiratory viruses https://www.science.org/lookup/doi/10.1126/science.abd9149
Are you aware of any good resources to help a lay person understand the basic concepts around this?
"Some 11,246 new cases out of around 145,000 tests that were performed on Wednesday were diagnosed with the virus, the Health Ministry reported on Thursday evening, with 7.9% of those screened testing positive – the highest percentage since the start of the pandemic. Israel is in first place in the world in the number of daily cases per capita in the last seven days, according to international reports."
Source: https://www.jpost.com/health-and-wellness/coronavirus/israel...
To put it in perspective: 11246 cases in Israel, in proportion to the population, is roughly equivalent to 400K cases a day in US.
Practically, nobody cares anymore. Compared to first lockdown, when streets were totally empty (a sight to behold), last half a year is business as usual.
e.g. 4 day work week (2 days full shutdown) to reduce transmission by preventing people going into offices and businesses.
And mandatory training and financial support to all businesses to move online and remote.
Especially where some of the population aren’t fully complying with suggested/requested measures. So we pretty much see the vaccination performance.
If it’s for health reasons (not leisure or traveling, PCR testing is free and there are many places available each day to test without scheduling.
Anyway, I was “fully vaccinated” on March 2020 iirc. I didn’t yet get the 3rd/booster shot. And I’m writing this being isolated with mild symptoms after testing positive for Covid. (Hoping symptoms will regress and I’ll be out within 10 days). I have no reliable assumption from where I got it and me and my oldest son are the only ones tested positive out of my close family and others we’ve been in touch with.
I would _not_ assume that this is settled science.
This out today:
https://www.medrxiv.org/content/10.1101/2021.08.30.21262701v...
> These data indicate that vaccination shortens the duration of time of high transmission potential, minimizes symptom duration, and may restrict tissue dissemination.
I mean, this isn't true... less effective, sure. But it's not ineffective by any measure.
If they had advertised 42% effectiveness rating when it was first launched they'd have probably gone back to the drawing board. (This is what Pfizer did recently with a second version that was aimed specifically at Delta but didn't fare any better than the first version.)
Read https://www.kff.org/policy-watch/covid-19-vaccine-breakthrou...
Aka if 90% of the 80+ year old population is vaccinated and 0% of the under 12 year old population is vaccinated then being unvaccinated starts to look like a good option. Except what you really want is to be young.
not really https://eu.boell.org/sites/default/files/2021-06/IL%2004.jpg
Except for teenagers as it was pointed out, though i usually didn't consider them because of being outliers wrt. history of vaccination. Well, lets consider them too. That is new cases by age http://cdn.statcdn.com/Infographic/images/normal/25295.jpeg
Let's look at opposites:
60-69 - 90% vaccination, 8% cases, 0.5M population
10-19 - 25% vaccination, 40% cases, 1.4M population.
I.e. almost 3x population, 5x cases with 25% vs 90% vaccination rate. Simple arithmetic - vaccinated chances to get infected are ~35% that of unvaccinated. Whatever way you slice and dice these numbers or the available numbers from other well vaccinated places like MA, UK, Singapore you always get in the 25%-40% ballpark.
However, youth is protection from serious complications or deaths. So if you look hospitalizations or deaths rather than positive tests for infections the graphs look very different. The Simpson’s paradox means your less likely to die after a COVID vaccination, but it’s easy to slice the data to make it look otherwise. https://en.wikipedia.org/wiki/Simpson%27s_paradox
That’s from two different effects the vaccinated and prior infected are both less sick and sick for a shorter periods. Which is why people talk about herd immunity. Of course the longer people go unvaccinated the more evolution is pushing COVID to become ever more infectious aka Delta as part of a long line of slightly worse variants.
But, again eventually almost everyone gets it or the vaccine so there is major pressure to get people vaccinated or just open up so the unvaccinated get sick.
The vaccine is probably just ramping up the immune system response for a few months. That alone would prevent death and since we don't really have anything else, it's still better than nothing.
However, vaccination induces a slightly different immune response compared to natural infection [2][3] . These differences may account for variation in effectiveness between vaccine-induced and naturally acquired immunity.
[1] Rapid induction of antigen-specific CD4+ T cells is associated with coordinated humoral and cellular immune responses to SARS-CoV-2 mRNA vaccination https://www.cell.com/immunity/fulltext/S1074-7613(21)00308-3
[2] Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection https://pubmed.ncbi.nlm.nih.gov/34103407/
[3] mRNA vaccination compared to infection elicits an IgG-predominant response with greater SARS-CoV-2 specificity and similar decrease in variant spike recognition https://www.medrxiv.org/content/medrxiv/early/2021/04/07/202...
What's the variation you are referring to?
It's all preliminary data. However, the sinopharm vaccine, which is the whole virus, not just spike protein, seems to lose effectiveness after several months as well.
I find that when people use "categorically" in an assertion (denial), then there's good reason for doubt.
1. https://www.forbes.com/sites/roberthart/2021/08/25/vaccine-p...