Expected that Qubes OS is used somewhere, but it's not. By the way, it's sometimes more secure than air gapping: https://invisiblethingslab.com/resources/2014/Software_compa....
We also don't run that many complex commands on the actual OS, it's basically one of three things 99% of the time:
- Mount this CD containing some CSRs or etc
- Ask the HSM to please sign this
- Burn a CD with these files and then report the hash / PGP word list of the content on the CD
You can tell if you're using a part of the OS that hasn't been used in a session yet because you can hear the CD drive with the OS CD in it physically spin up :)