I too have worked in academia, and in partnership with them over 3 deacdes, so seen how the sausage is made. So I understand and recognise some of your points. Still we can and should be pro-science; but recognise that science in academia is extremely political, and increasingly bending to marketing pressures and industry influence.
A big problem, as I see it, is the unwillngness of academia to engage in debate with the public. Whilst academics nowadays are supported and encouraged to engage in "outreach"; the nature of that is almost always in broadcast mode.
In the age of social media, science needs to learn how to communicate, and engage with non-tenured people asking good, evidence based, questions. Sure they get bombarded with abuse and crackpots, but that should not mean ignoring absolutely everybody that approaches them with reason and civility; as so often happens.
Trust is breaking down in society. Is there any wonder, when trust grows from interaction?