Why do you think Python isn't good for comparing program structure? Certainly you could compare ASTs and bytecode pretty easy; I think it's actually much easier to do so than in C/C++ since you don't have to deal with preprocessor junk and compile flags influencing the meaning of the code. There's less available for classical analyses like data and control flow analysis, in part because those are much harder in dynamic languages, but there are some tools out there like the ones used in PyPy for getting SSA CFGs [1].
I feel like many people are equivocating a bit on what they mean by "regurgitating" here. It seems clear that the models have at best a shaky grasp on code semantics (e.g., they are bad at things like predicting what the output of some code will be: https://arxiv.org/abs/2112.00114), and struggle with problems that are very different from anything they've seen before.
[1] https://foss.heptapod.net/pypy/pypy/-/tree/branch/default/rp...