What this means is that we discovered that the structure and order, as we see in particle physics, actually appears everywhere in nature. For example, vibrations moving through a solid (such as when you tap the table in front of you) actually behave exactly like (what are incorrectly named for historical reasons) "fundamental" particles moving through space. They interact with each other mathematically with the exact same equations. Recently scientists even created a material which these "quasiparticles" (as the excitation are called) obey the laws of special relativity inside the solid, except the speed of light is replaced by the speed of sound in the solid.
All this probably reached its peak when the Higgs mechanism, and indeed pretty much the the entire theory between the Higgs particle, was discovered by P.W. Anderson in superconductors. He suggested that perhaps the same mechanism is what gave particles in the standard model their mass. He was proven correct, but the Nobel prize went to Higgs for historical and political reasons, and also because P.W.A already had one Nobel prize.
Now days high energy particle physics views space as a kind of medium, and the electrons and quarks etc as just being the particular manifestation of whatever chaotic thing is going on underneath (more particles or who knows what), which is meant by "effective theory".
Anyway, the point is that no, it isn't that case of a few fundamental rules are controlling everything. We now have a much better picture and it seems to be order and chaos appearing in all different scales in all different manner of ways and to understand each manifestation one needs to start a new each time.
Phillip Anderson's famous article "More is Different" from 1972 was the first to really espouse this point of view. It has become sort of an anthem for many scientists. https://www.tkm.kit.edu/downloads/TKM1_2011_more_is_differen...