Ask HN: Is it better to use an outsourced commenting system?
Is using something like Disqus much better than the built in commenting systems on Wordpress or Joomla?
For a technical readers, I'd go with Disqus, for a more general audience, with Facebook. (That is if you're playing the numbers game and don't care about Facebook taking over the Internet.)
The disadvantage is that the comments are pulled in by Javascript and are not part of your page. Therefore they won't get picked up by the search engines.