Unfortunately the Gen 2 is also mostly "non-repairable"; I had to get a total phone replacement for something as simple as a dying Thunderbolt port. According to the person at the Genius Bar, the 12 Mini is much more repairable, more like the first-gen SE in terms of its internals.
This SE Gen 3 still has the rounded/slim iPhone 6 body style, so I would expect it to be equally non-repairable. So all things equal, I would still go for the 12 Mini over the SE Gen 2 if I could make the choice over again.