Berkshire is in the SP500, but so are Apple, Coca Cola, Amex, BoA, etc. which are Berkshire largest investments. So if Coca Cola has an idiosyncratic hit, then you get hit twice by it: first in your KO holdings, then in your BRK.A holdings.
At the extreme, if there is a company that then invests in Berkshire and so on, you could end up overweighting a lot certain firms. Also, isn't there double counting in terms of the stock market cap?