I also have a Plugable TB3 dock. I don't know if it's the dock, or the laptop... but MacOS won't remember my monitor layout at all. Even if the computer just goes to sleep, it wakes up and forgets my monitor layout. Gotta fix it multiple times a day sometimes. Sometimes one of the monitors doesn't show up at all, and I gotta unplug and plug it back in. Sometimes doing that, the computer will actually get the proper monitor layout on like the 4th try.