And now that the Fed Circuit in the Bilski case has backed off a bit from their flagrantly wrong In re. Alappat decision and its affirmation in State Street, one could argue that there isn't any court left claiming that software for general-purpose digital computers is patentable.
I'm also interested in arguments for or against the notion that the Federal Circuit overturned themselves in the Bilski case, affirmed by SCOTUS.
If memory serves, Kennedy's arguments in the SCOTUS decision in the Bilski case are based in part on apparent congressional intent. I don't have concrete citations to actual congressional activity; this impression is seeing it alluded to or asserted in decisions such as In re. Bilski. I'm making the assumption that the justices are not totally fabricating, although they may be misinterpreting.