The video shows how to get some of them off your face if you want to study them. Not how to get rid of them permanently, or even temporarily.
Of shows a relationship. The Queen of the UK. Get rid of the mites on my face!
Romance de was translated into English as off because that is the appropriate translation of Latin (but not Romance) de.[1] And, the senses being unrelated, of diverged from off.
[1] Actually, the conventional translation my Latin instruction used for de as a verbal prefix was "down from". (As in "descend".) As a preposition it has a few different uses, including "off", "down from", and "about" (as in "what's that book about?"). "From" more generally would be e or ex, but "down from" gets its own preposition.
For your point [1], I did like de when I studied Spanish in school.
This construction makes it clear that we're taking some mites, presumably to do something with them, rather than trying to render the face mite-free.