Alternative idea: convert the file imported from remarkable to vector images (SVG) and enclose the hyperlinks in <a> tags
It’s possible they’ve improved the technique now, but I’d be a little surprised if they have, given that it amounts to throwing away the entire thing and starting from scratch.
There are a few open-source libraries to convert the .rm format to SVG. None are good for anything but the fineliner. I’ve written the closest one to decent for tools like the pen (though I haven’t got round to publishing it), but it still lacks the texture (pretty much unavoidable) and is thus never going to be excellent. SVG just lacks the necessary primitives.